Plot total protein intensity per sample

Usage

plot_tot_int_samples(se, ain = "raw", color_by = NULL, label_by = NULL)

Arguments

se: SummarizedExperiment containing all necessary information of the proteomics data set
ain: String which data type should be used (default raw)
color_by: String specifying the column to color the samples (If NULL, the condition column of the SummarizedExperiment object is used. If "No", no color bar added.)
label_by: String specifying the column to label the samples (If NULL, the labels column of the SummarizedExperiment object is used. If "No", no labeling of samples done.)

Value

list of a ggplot object and the dataframe of outliers

Examples

data(tuberculosis_TMT_se)
plot_tot_int_samples(tuberculosis_TMT_se, ain="raw", color_by = NULL,
                     label_by = NULL)
#> Condition of SummarizedExperiment used!
#> Label of SummarizedExperiment used!