Plot profiles of the spike-in and background proteins using the log2 average protein intensities as a function of the different concentrations.

Plot profiles of the spike-in and background proteins using the log2 average protein intensities as a function of the different concentrations.

Usage

plot_profiles_spiked(se, xlab = "Concentration")

Arguments

se

SummarizedExperiment containing all necessary information of the proteomics data set

xlab

String for the x-label of the plot

Value

ggplot object

Examples

data(spike_in_se)
plot_profiles_spiked(spike_in_se, xlab = "Concentration")
#> Warning: 'measure.vars' [LFQ.intensity.H1, LFQ.intensity.H2, LFQ.intensity.H3, LFQ.intensity.L1, ...] are not all of the same type. By order of hierarchy, the molten data value column will be of type 'character'. All measure variables not of type 'character' will be coerced too. Check DETAILS in ?melt.data.table for more on coercion.
#> Warning: Removed 447 rows containing missing values or values outside the scale range
#> (`geom_point()`).
#> Warning: Removed 447 rows containing missing values or values outside the scale range
#> (`geom_line()`).