Overview plots of DE results

Usage

plot_overview_DE_bar(
  de_res,
  ain = NULL,
  comparisons = NULL,
  plot_type = "single"
)

Arguments

de_res: data table resulting of run_DE
ain: Vector of strings of normalization methods to visualize (must be valid normalization methods saved in de_res)
comparisons: Vector of comparisons (must be valid comparisons saved in de_res)
plot_type: String indicating whether to plot a single plot per comparison ("single"), facet by comparison ("facet_comp"), stack the number of DE per comparison ("stacked"), or stack the number of DE per comparison but facet by up- and down-regulated ("facet_regulation")

Value

list of ggplot objects or single object if plot_type = facet or stacked

Examples

data(tuberculosis_TMT_de_res)
plot_overview_DE_bar(tuberculosis_TMT_de_res, ain = NULL, comparisons = NULL,
                     plot_type = "facet_regulation")
#> All comparisons of de_res will be visualized.
#> All normalization methods of de_res will be visualized.