Jaccard similarity heatmap of DE proteins of the different normalization methods — plot_jaccard_heatmap • PRONE

Jaccard similarity heatmap of DE proteins of the different normalization methods

Usage

plot_jaccard_heatmap(
  de_res,
  ain = NULL,
  comparisons = NULL,
  plot_type = "single"
)

Arguments

de_res: data table resulting of run_DE
ain: Vector of strings of normalization methods to visualize (must be valid normalization methods saved in de_res)
comparisons: Vector of comparisons (must be valid comparisons saved in de_res)
plot_type: String indicating whether to plot a single plot per comparison ("single"), facet by comparison ("facet_comp"), or include all comparisons in a single plot ("all")

Value

ggplot object (list of objects if plot_type == "single)

Examples

data(tuberculosis_TMT_de_res)
plot_jaccard_heatmap(tuberculosis_TMT_de_res, ain = NULL,
                    comparisons = NULL, plot_type = "all")
#> All comparisons of de_res will be visualized.
#> All normalization methods of de_res will be visualized.