Plot intragroup correlation of the normalized data

Usage

plot_intragroup_correlation(
  se,
  ain = NULL,
  condition = NULL,
  method = "pearson"
)

Arguments

se: SummarizedExperiment containing all necessary information of the proteomics data set
ain: Vector of strings which assay should be used as input (default NULL). If NULL then all normalization of the se object are plotted next to each other.
condition: column name of condition (if NULL, condition saved in SummarizedExperiment will be taken)
method: String specifying the method for correlation calculation (pearson, spearman or kendall)

Value

ggplot object (boxplot)

Examples

data(tuberculosis_TMT_se)
plot_intragroup_correlation(tuberculosis_TMT_se, ain = NULL,
                            condition = NULL, method = "pearson")
#> All assays of the SummarizedExperiment will be used.
#> Condition of SummarizedExperiment used!