Plot ROC curve and barplot of AUC values for each method for a specific comparion or for all comparisons

Usage

plot_ROC_AUC_spiked(se, de_res, ain = NULL, comparisons = NULL)

Arguments

se: SummarizedExperiment containing all necessary information of the proteomics data set
de_res: data table resulting of run_DE
ain: Vector of strings of normalization methods to visualize (must be valid normalization methods saved in stats)
comparisons: Vector of comparisons (must be valid comparisons saved in stats)

Value

list of ggplot objects

Examples

data(spike_in_se)
data(spike_in_de_res)
plot_ROC_AUC_spiked(spike_in_se, spike_in_de_res)
#> All comparisons of de_res will be visualized.
#> All normalization methods of de_res will be visualized.
#> $ROC

#> 
#> $AUC_bars

#> 
#> $AUC_box

#> 
#> $AUC_dt
#>   PANEL Comparison group   Assay       AUC
#> 1     1        L-H     1  LoessF 0.9686312
#> 2     1        L-H     2  Median 0.7404943
#> 3     1        L-H     3 RobNorm 0.9797212
#> 4     1        L-H     4     VSN 0.9797212
#> 5     1        L-H     5    log2 0.7038973
#>