Generate SummarizedExperiment object containing the samples of all assays in a single object (for overall PCA) — generate_complete_SE • PRONE

Generate SummarizedExperiment object containing the samples of all assays in a single object (for overall PCA)

Usage

generate_complete_SE(se, ain = NULL)

Arguments

se: SummarizedExperiment containing all necessary information of the proteomics data set
ain: String which assay should be used as input (default NULL) If NULL then all normalization of the SummarizedExperiment object are plotted next to each other (except raw).

Value

SummarizedExperiment object with single assay containing the normalized samples of all assays

Examples

data(tuberculosis_TMT_se)
tuberculosis_TMT_se_all <- generate_complete_SE(tuberculosis_TMT_se,
                                                ain = NULL)
#> All assays of the SummarizedExperiment will be used.