Remove proteins by value in specific column

Remove proteins by value in specific column

Usage

filter_out_proteins_by_value(se, column_name = "Reverse", values = c("+"))

Arguments

se

SummarizedExperiment containing all necessary information of the proteomics data set

column_name

name of column of which proteins with a specific value should be removed

values

value of the column defining the proteins that should be removed

Value

filtered SummarizedExperiment object

Examples

data(tuberculosis_TMT_se)
tuberculosis_TMT_se <- filter_out_proteins_by_value(tuberculosis_TMT_se,
                                 column_name = "Reverse", values = c("+"))
#> 17 proteins were removed.