Filter proteins based on their NA pattern using a specific threshold

Filter proteins based on their NA pattern using a specific threshold

Usage

filter_out_NA_proteins_by_threshold(se, thr = 0.8)

Arguments

se

SummarizedExperiment containing all necessary information of the proteomics data set

thr

Threshold for the minimum fraction of valid values allowed for any protein

Value

filtered SummarizedExperiment object

Examples

data(tuberculosis_TMT_se)
tuberculosis_TMT_se <- filter_out_NA_proteins_by_threshold(tuberculosis_TMT_se,
                                                       thr = 0.8)
#> 134 proteins were removed.